IL_7UNV_179

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNV_179 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0653

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

7UNV|1|A|G|1656
7UNV|1|A|G|1657
7UNV|1|A|A|1658
7UNV|1|A|A|1659
7UNV|1|A|C|1660
7UNV|1|A|U|1661
7UNV|1|A|A|1662
7UNV|1|A|G|1663
7UNV|1|A|G|1664
*
7UNV|1|A|C|1977
7UNV|1|A|U|1978
7UNV|1|A|G|1979
7UNV|1|A|U|1980
7UNV|1|A|C|1981

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain M

50S ribosomal protein L14