IL_7UNV_180

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNV_180 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0933

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7UNV|1|A|U|1838
7UNV|1|A|U|1839
7UNV|1|A|A|1840
7UNV|1|A|A|1841
7UNV|1|A|U|1842
7UNV|1|A|U|1843
7UNV|1|A|G|1844
7UNV|1|A|A|1845
7UNV|1|A|U|1846
7UNV|1|A|G|1847
*
7UNV|1|A|U|1869
7UNV|1|A|U|1870
7UNV|1|A|G|1871
7UNV|1|A|A|1872
7UNV|1|A|U|1873
7UNV|1|A|C|1874
7UNV|1|A|G|1875
7UNV|1|A|A|1876
7UNV|1|A|A|1877
7UNV|1|A|G|1878

Current chains

Chain A

23S Ribosomal RNA

Nearby chains