3D structure

PDB id
7UNW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
7UNW|1|a|U|626
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UNW_144 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.0837
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

7UNW|1|a|U|599
7UNW|1|a|G|600
7UNW|1|a|A|601
7UNW|1|a|A|602
7UNW|1|a|A|603
7UNW|1|a|U|604
7UNW|1|a|C|605
7UNW|1|a|C|606
*
7UNW|1|a|G|622
7UNW|1|a|A|623
7UNW|1|a|A|624
7UNW|1|a|C|625
7UNW|1|a|U|626
7UNW|1|a|G|627

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain d
30S ribosomal protein S4
Chain h
30S ribosomal protein S8
Chain p
30S ribosomal protein S16
Chain q
30S ribosomal protein S17

Coloring options:


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