3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
GGAUAAC*GCUAAUAC
Length
15 nucleotides
Bulged bases
7UPH|1|I|U|172
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UPH_012 not in the Motif Atlas
Homologous match to IL_5J7L_012
Geometric discrepancy: 0.2398
The information below is about IL_5J7L_012
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_80604.6
Basepair signature
cWW-cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
3

Unit IDs

7UPH|1|I|G|146
7UPH|1|I|G|147
7UPH|1|I|A|148
7UPH|1|I|U|149
7UPH|1|I|A|150
7UPH|1|I|A|151
7UPH|1|I|C|152
*
7UPH|1|I|G|167
7UPH|1|I|C|168
7UPH|1|I|U|169
7UPH|1|I|A|170
7UPH|1|I|A|171
7UPH|1|I|U|172
7UPH|1|I|A|173
7UPH|1|I|C|174

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain G
30S ribosomal protein S20

Coloring options:


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