IL_7UPH_022

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_022 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.2765

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7UPH|1|I|G|449
7UPH|1|I|A|450
7UPH|1|I|A|451
7UPH|1|I|G|452
7UPH|1|I|G|453
7UPH|1|I|G|454
*
7UPH|1|I|C|476
7UPH|1|I|A|477
7UPH|1|I|U|478
7UPH|1|I|U|479
7UPH|1|I|G|480
7UPH|1|I|A|481
7UPH|1|I|C|482

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain C

30S ribosomal protein S16