IL_7UPH_025

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

7UPH|1|I|A|571

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_025 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.2065

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

7UPH|1|I|C|568
7UPH|1|I|G|569
7UPH|1|I|U|570
7UPH|1|I|A|571
7UPH|1|I|A|572
7UPH|1|I|A|573
7UPH|1|I|G|574
*
7UPH|1|I|C|879
7UPH|1|I|G|880

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain D

30S ribosomal protein S17

Chain g

30S ribosomal protein S12