IL_7UPH_032

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

7UPH|1|I|A|664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_032 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.3368

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7UPH|1|I|U|661
7UPH|1|I|A|662
7UPH|1|I|G|663
7UPH|1|I|A|664
7UPH|1|I|G|665
*
7UPH|1|I|U|739
7UPH|1|I|G|740
7UPH|1|I|G|741
7UPH|1|I|A|742

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain B

30S ribosomal protein S15

Chain E

30S ribosomal protein S18

Chain a

30S ribosomal protein S6