3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
AGAAUU*AGGAAU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UPH_033 not in the Motif Atlas
Homologous match to IL_4LFB_030
Geometric discrepancy: 0.2754
The information below is about IL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

7UPH|1|I|A|672
7UPH|1|I|G|673
7UPH|1|I|A|674
7UPH|1|I|A|675
7UPH|1|I|U|676
7UPH|1|I|U|677
*
7UPH|1|I|A|711
7UPH|1|I|G|712
7UPH|1|I|G|713
7UPH|1|I|A|714
7UPH|1|I|A|715
7UPH|1|I|U|716

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain E
30S ribosomal protein S18
Chain H
30S ribosomal protein S21
Chain a
30S ribosomal protein S6
Chain f
30S ribosomal protein S11

Coloring options:


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