3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
CAAAC*GGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UPH_036 not in the Motif Atlas
Homologous match to IL_4LFB_033
Geometric discrepancy: 0.2602
The information below is about IL_4LFB_033
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

7UPH|1|I|C|778
7UPH|1|I|A|779
7UPH|1|I|A|780
7UPH|1|I|A|781
7UPH|1|I|C|782
*
7UPH|1|I|G|798
7UPH|1|I|G|799
7UPH|1|I|U|800
7UPH|1|I|A|801
7UPH|1|I|G|802

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain H
30S ribosomal protein S21
Chain f
30S ribosomal protein S11

Coloring options:


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