3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
GGAGUACG*UAAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UPH_037 not in the Motif Atlas
Homologous match to IL_5J7L_038
Geometric discrepancy: 0.1444
The information below is about IL_5J7L_038
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

7UPH|1|I|G|886
7UPH|1|I|G|887
7UPH|1|I|A|888
7UPH|1|I|G|889
7UPH|1|I|U|890
7UPH|1|I|A|891
7UPH|1|I|C|892
7UPH|1|I|G|893
*
7UPH|1|I|U|904
7UPH|1|I|A|905
7UPH|1|I|A|906
7UPH|1|I|A|907
7UPH|1|I|A|908
7UPH|1|I|C|909

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain g
30S ribosomal protein S12

Coloring options:


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