IL_7UPH_040

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

7UPH|1|I|C|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_040 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.2575

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7UPH|1|I|G|932
7UPH|1|I|C|933
7UPH|1|I|A|934
*
7UPH|1|I|U|1379
7UPH|1|I|U|1380
7UPH|1|I|C|1381
7UPH|1|I|C|1382
7UPH|1|I|C|1383

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain b

30S ribosomal protein S7

Chain d

30S ribosomal protein S9