3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
GUC*GAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UPH_042 not in the Motif Atlas
Geometric match to IL_5Z1I_003
Geometric discrepancy: 0.2843
The information below is about IL_5Z1I_003
Detailed Annotation
Decoding loop related
Broad Annotation
Decoding loop related
Motif group
IL_31737.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
11

Unit IDs

7UPH|1|I|G|987
7UPH|1|I|U|988
7UPH|1|I|C|989
*
7UPH|1|I|G|1214
7UPH|1|I|A|1215
7UPH|1|I|C|1216

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain A
30S ribosomal protein S14
Chain F
30S ribosomal protein S19

Coloring options:


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