IL_7UPH_056

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

7UPH|1|I|C|1402

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_056 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.2359

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7UPH|1|I|G|1400
7UPH|1|I|4OC|1401
7UPH|1|I|C|1402
7UPH|1|I|C|1403
*
7UPH|1|I|G|4401
7UPH|1|I|UR3|4402
7UPH|1|I|A|4403
7UPH|1|I|A|4404
7UPH|1|I|C|4405

Current chains

Chain I

Tethered rRNA

Nearby chains