IL_7UPH_057

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GU(5MC)ACA*UGAAGUC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_057 not in the Motif Atlas

Homologous match to IL_6CZR_369

Geometric discrepancy: 0.4637

The information below is about IL_6CZR_369

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71294.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7UPH|1|I|G|1404
7UPH|1|I|U|1405
7UPH|1|I|5MC|1406
7UPH|1|I|A|1407
7UPH|1|I|C|1408
7UPH|1|I|A|1409
*
7UPH|1|I|U|4394
7UPH|1|I|G|4395
7UPH|1|I|A|4396
7UPH|1|I|A|4397
7UPH|1|I|G|4398
7UPH|1|I|U|4399
7UPH|1|I|C|4400

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain g

30S ribosomal protein S12