IL_7UPH_072

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_072 not in the Motif Atlas

Geometric match to IL_7A0S_006

Geometric discrepancy: 0.2079

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7UPH|1|I|G|1688
7UPH|1|I|G|1689
7UPH|1|I|A|1690
7UPH|1|I|A|1691
7UPH|1|I|C|1692
7UPH|1|I|U|1693
7UPH|1|I|G|1694
*
7UPH|1|I|C|1701
7UPH|1|I|U|1702
7UPH|1|I|A|1703
7UPH|1|I|A|1704
7UPH|1|I|G|1705
7UPH|1|I|U|1706
7UPH|1|I|A|1707
7UPH|1|I|C|1708

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain T

50S ribosomal protein L15

Chain w

50S ribosomal protein L28