IL_7UPH_082

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7UPH|1|I|G|2301, 7UPH|1|I|G|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_082 not in the Motif Atlas

Geometric match to IL_7A0S_015

Geometric discrepancy: 0.2376

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7UPH|1|I|G|2174
7UPH|1|I|A|2175
7UPH|1|I|A|2176
7UPH|1|I|A|2177
7UPH|1|I|C|2178
*
7UPH|1|I|G|2299
7UPH|1|I|A|2300
7UPH|1|I|G|2301
7UPH|1|I|A|2302
7UPH|1|I|U|2303
7UPH|1|I|A|2304
7UPH|1|I|G|2305
7UPH|1|I|C|2306

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain T

50S ribosomal protein L15