IL_7UPH_085

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_085 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.3842

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7UPH|1|I|U|2203
7UPH|1|I|G|2204
7UPH|1|I|A|2205
7UPH|1|I|A|2206
7UPH|1|I|G|2207
*
7UPH|1|I|U|2224
7UPH|1|I|G|2225
7UPH|1|I|G|2226
7UPH|1|I|A|2227
7UPH|1|I|G|2228

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain K

50S ribosomal protein L2