IL_7UPH_087

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

7UPH|1|I|G|2276, 7UPH|1|I|A|2288, 7UPH|1|I|A|2289, 7UPH|1|I|U|2290

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_087 not in the Motif Atlas

Geometric match to IL_7A0S_021

Geometric discrepancy: 0.1179

The information below is about IL_7A0S_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

7UPH|1|I|G|2275
7UPH|1|I|G|2276
7UPH|1|I|G|2277
*
7UPH|1|I|C|2287
7UPH|1|I|A|2288
7UPH|1|I|A|2289
7UPH|1|I|U|2290
7UPH|1|I|C|2291

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain k

50S ribosomal protein L34

Chain r

50S ribosomal protein L22