IL_7UPH_091
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- GGGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UPH_091 not in the Motif Atlas
- Geometric match to IL_5J7L_270
- Geometric discrepancy: 0.1815
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7UPH|1|I|G|2356
7UPH|1|I|G|2357
7UPH|1|I|G|2358
7UPH|1|I|G|2359
7UPH|1|I|U|2360
7UPH|1|I|A|2361
7UPH|1|I|G|2362
*
7UPH|1|I|C|2409
7UPH|1|I|G|2410
7UPH|1|I|A|2411
7UPH|1|I|A|2412
7UPH|1|I|U|2413
7UPH|1|I|A|2414
7UPH|1|I|C|2415
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain J
- 5S ribosomal RNA; 5S rRNA
- Chain U
- 50S ribosomal protein L16
- Chain u
- 50S ribosomal protein L25
- Chain v
- 50S ribosomal protein L27
- Chain y
- 50S ribosomal protein L30
Coloring options: