3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UPH_091 not in the Motif Atlas
Geometric match to IL_5J7L_270
Geometric discrepancy: 0.1815
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

7UPH|1|I|G|2356
7UPH|1|I|G|2357
7UPH|1|I|G|2358
7UPH|1|I|G|2359
7UPH|1|I|U|2360
7UPH|1|I|A|2361
7UPH|1|I|G|2362
*
7UPH|1|I|C|2409
7UPH|1|I|G|2410
7UPH|1|I|A|2411
7UPH|1|I|A|2412
7UPH|1|I|U|2413
7UPH|1|I|A|2414
7UPH|1|I|C|2415

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain J
5S ribosomal RNA; 5S rRNA
Chain U
50S ribosomal protein L16
Chain u
50S ribosomal protein L25
Chain v
50S ribosomal protein L27
Chain y
50S ribosomal protein L30

Coloring options:


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