IL_7UPH_103

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

7UPH|1|I|U|2527

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_103 not in the Motif Atlas

Geometric match to IL_4RUM_001

Geometric discrepancy: 0.2867

The information below is about IL_4RUM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7UPH|1|I|G|2525
7UPH|1|I|A|2526
7UPH|1|I|U|2527
7UPH|1|I|G|2528
*
7UPH|1|I|C|2615
7UPH|1|I|G|2616
7UPH|1|I|C|2617

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain U

50S ribosomal protein L16

Chain m

50S ribosomal protein L36