IL_7UPH_110

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7UPH|1|I|C|2705

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_110 not in the Motif Atlas

Geometric match to IL_5J7L_288

Geometric discrepancy: 0.2538

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7UPH|1|I|C|2702
7UPH|1|I|U|2703
7UPH|1|I|G|2704
7UPH|1|I|C|2705
7UPH|1|I|G|2706
7UPH|1|I|A|2707
7UPH|1|I|A|2708
7UPH|1|I|G|2709
*
7UPH|1|I|U|2728
7UPH|1|I|G|2729
7UPH|1|I|G|2730
7UPH|1|I|A|2731
7UPH|1|I|G|2732

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain p

50S ribosomal protein L20