IL_7UPH_115

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_115 not in the Motif Atlas

Geometric match to IL_4WF9_052

Geometric discrepancy: 0.1964

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7UPH|1|I|C|2851
7UPH|1|I|G|2852
7UPH|1|I|A|2853
7UPH|1|I|G|2854
7UPH|1|I|G|2855
*
7UPH|1|I|C|2864
7UPH|1|I|G|2865
7UPH|1|I|U|2866
7UPH|1|I|A|2867
7UPH|1|I|G|2868

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain k

50S ribosomal protein L34