IL_7UPH_118

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

7UPH|1|I|U|3053

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_118 not in the Motif Atlas

Geometric match to IL_5J7L_296

Geometric discrepancy: 0.2572

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7UPH|1|I|G|2926
7UPH|1|I|A|2927
7UPH|1|I|A|2928
7UPH|1|I|G|2929
*
7UPH|1|I|C|3051
7UPH|1|I|C|3052
7UPH|1|I|U|3053
7UPH|1|I|G|3054
7UPH|1|I|C|3055

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain K

50S ribosomal protein L2