3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
GAA*UCC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UPH_127 not in the Motif Atlas
Geometric match to IL_5J7L_305
Geometric discrepancy: 0.3989
The information below is about IL_5J7L_305
Detailed Annotation
Isolated tWW turn
Broad Annotation
No text annotation
Motif group
IL_67095.2
Basepair signature
cWW-tWW-cWW
Number of instances in this motif group
8

Unit IDs

7UPH|1|I|G|3157
7UPH|1|I|A|3158
7UPH|1|I|A|3159
*
7UPH|1|I|U|3489
7UPH|1|I|C|3490
7UPH|1|I|C|3491

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain L
50S ribosomal protein L3
Chain S
50S ribosomal protein L14
Chain o
50S ribosomal protein L19

Coloring options:


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