IL_7UPH_144

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

7UPH|1|I|A|3933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_144 not in the Motif Atlas

Geometric match to IL_7RQB_081

Geometric discrepancy: 0.1957

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

7UPH|1|I|A|3564
7UPH|1|I|A|3565
*
7UPH|1|I|U|3932
7UPH|1|I|A|3933
7UPH|1|I|C|3934
7UPH|1|I|U|3935

Current chains

Chain I

Tethered rRNA

Nearby chains