IL_7UPH_145

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

7UPH|1|I|G|3732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_145 not in the Motif Atlas

Geometric match to IL_7A0S_077

Geometric discrepancy: 0.2573

The information below is about IL_7A0S_077

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7UPH|1|I|U|3575
7UPH|1|I|A|3576
7UPH|1|I|G|3577
*
7UPH|1|I|U|3730
7UPH|1|I|G|3731
7UPH|1|I|G|3732
7UPH|1|I|G|3733

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain w

50S ribosomal protein L28