IL_7UPH_146

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CUUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_146 not in the Motif Atlas

Geometric match to IL_5TBW_128

Geometric discrepancy: 0.239

The information below is about IL_5TBW_128

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7UPH|1|I|C|3578
7UPH|1|I|U|3579
7UPH|1|I|U|3580
7UPH|1|I|G|3581
*
7UPH|1|I|C|3726
7UPH|1|I|U|3727
7UPH|1|I|G|3728
7UPH|1|I|G|3729

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain w

50S ribosomal protein L28