IL_7UPH_150

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GUGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

7UPH|1|I|A|3613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_150 not in the Motif Atlas

Geometric match to IL_4V88_406

Geometric discrepancy: 0.3485

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

7UPH|1|I|G|3604
7UPH|1|I|U|3605
7UPH|1|I|G|3606
7UPH|1|I|U|3607
7UPH|1|I|A|3608
7UPH|1|I|G|3609
7UPH|1|I|G|3610
7UPH|1|I|A|3611
7UPH|1|I|U|3612
7UPH|1|I|A|3613
7UPH|1|I|G|3614
7UPH|1|I|G|3615
*
7UPH|1|I|C|3671
7UPH|1|I|C|3672
7UPH|1|I|C|3673

Current chains

Chain I

Tethered rRNA

Nearby chains