IL_7UPH_155

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GUUC*GGC

Length

7 nucleotides

Bulged bases

7UPH|1|I|U|3896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_155 not in the Motif Atlas

Geometric match to IL_3KTW_002

Geometric discrepancy: 0.3795

The information below is about IL_3KTW_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

7UPH|1|I|G|3894
7UPH|1|I|U|3895
7UPH|1|I|U|3896
7UPH|1|I|C|3897
*
7UPH|1|I|G|3908
7UPH|1|I|G|3909
7UPH|1|I|C|3910

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain T

50S ribosomal protein L15

Chain j

50S ribosomal protein L33

Chain l

50S ribosomal protein L35