IL_7UPH_160

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGG*C(PSU)GG

Length

7 nucleotides

Bulged bases

7UPH|1|I|G|4075

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_160 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3817

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7UPH|1|I|C|4001
7UPH|1|I|G|4002
7UPH|1|I|G|4003
*
7UPH|1|I|C|4073
7UPH|1|I|PSU|4074
7UPH|1|I|G|4075
7UPH|1|I|G|4076

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain L

50S ribosomal protein L3