IL_7UPH_167

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_167 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.2826

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7UPH|1|I|C|4146
7UPH|1|I|U|4147
7UPH|1|I|A|4148
7UPH|1|I|G|4149
7UPH|1|I|U|4150
7UPH|1|I|A|4151
7UPH|1|I|C|4152
*
7UPH|1|I|G|4157
7UPH|1|I|G|4158
7UPH|1|I|A|4159
7UPH|1|I|C|4160
7UPH|1|I|C|4161
7UPH|1|I|G|4162

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain O

50S ribosomal protein L6