IL_7UPH_170

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GUU*ACUGC

Length

8 nucleotides

Bulged bases

7UPH|1|I|C|4206, 7UPH|1|I|U|4207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_170 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.3056

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

7UPH|1|I|G|4188
7UPH|1|I|U|4189
7UPH|1|I|U|4190
*
7UPH|1|I|A|4205
7UPH|1|I|C|4206
7UPH|1|I|U|4207
7UPH|1|I|G|4208
7UPH|1|I|C|4209

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain V

50S ribosomal protein L17

Chain o

50S ribosomal protein L19