IL_7UPH_171
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- GAUAAG*CGAAAC
- Length
- 12 nucleotides
- Bulged bases
- 7UPH|1|I|A|4259
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UPH_171 not in the Motif Atlas
- Geometric match to IL_5J7L_350
- Geometric discrepancy: 0.2507
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7UPH|1|I|G|4231
7UPH|1|I|A|4232
7UPH|1|I|U|4233
7UPH|1|I|A|4234
7UPH|1|I|A|4235
7UPH|1|I|G|4236
*
7UPH|1|I|C|4256
7UPH|1|I|G|4257
7UPH|1|I|A|4258
7UPH|1|I|A|4259
7UPH|1|I|A|4260
7UPH|1|I|C|4261
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain O
- 50S ribosomal protein L6
- Chain R
- 50S ribosomal protein L13
- Chain m
- 50S ribosomal protein L36
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