IL_7UPH_201

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGAAGG*UCUAAG

Length

12 nucleotides

Bulged bases

7UPH|1|I|A|2914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_201 not in the Motif Atlas

Geometric match to IL_8VTW_106

Geometric discrepancy: 0.3775

The information below is about IL_8VTW_106

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49767.7

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7UPH|1|I|C|2911
7UPH|1|I|G|2912
7UPH|1|I|A|2913
7UPH|1|I|A|2914
7UPH|1|I|G|2915
7UPH|1|I|G|2916
*
7UPH|1|I|U|3070
7UPH|1|I|C|3071
7UPH|1|I|U|3072
7UPH|1|I|A|3073
7UPH|1|I|A|3074
7UPH|1|I|G|3075

Current chains

Chain I

Tethered rRNA

Nearby chains