IL_7UPH_208

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GUGUAGGAUAGGU*ACCC

Length

17 nucleotides

Bulged bases

7UPH|1|I|U|3605, 7UPH|1|I|A|3608, 7UPH|1|I|G|3609, 7UPH|1|I|U|3612, 7UPH|1|I|A|3613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_208 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.3026

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

7UPH|1|I|G|3604
7UPH|1|I|U|3605
7UPH|1|I|G|3606
7UPH|1|I|U|3607
7UPH|1|I|A|3608
7UPH|1|I|G|3609
7UPH|1|I|G|3610
7UPH|1|I|A|3611
7UPH|1|I|U|3612
7UPH|1|I|A|3613
7UPH|1|I|G|3614
7UPH|1|I|G|3615
7UPH|1|I|U|3616
*
7UPH|1|I|A|3670
7UPH|1|I|C|3671
7UPH|1|I|C|3672
7UPH|1|I|C|3673

Current chains

Chain I

Tethered rRNA

Nearby chains