IL_7UPH_222

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGUUC*GAAGUG

Length

11 nucleotides

Bulged bases

7UPH|1|I|G|2742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_222 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3086

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7UPH|1|I|C|2690
7UPH|1|I|G|2691
7UPH|1|I|U|2692
7UPH|1|I|U|2693
7UPH|1|I|C|2694
*
7UPH|1|I|G|2739
7UPH|1|I|A|2740
7UPH|1|I|A|2741
7UPH|1|I|G|2742
7UPH|1|I|U|2743
7UPH|1|I|G|2744

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain T

50S ribosomal protein L15

Chain p

50S ribosomal protein L20