IL_7UPH_227

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

7UPH|1|I|U|3985

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_227 not in the Motif Atlas

Geometric match to IL_7A0S_086

Geometric discrepancy: 0.245

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

7UPH|1|I|A|3953
7UPH|1|I|U|3954
7UPH|1|I|A|3955
*
7UPH|1|I|U|3983
7UPH|1|I|G|3984
7UPH|1|I|U|3985
7UPH|1|I|U|3986
7UPH|1|I|U|3987

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain U

50S ribosomal protein L16