IL_7UQB_145
3D structure
- PDB id
- 7UQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- GUAGU(A2M)(OMG)*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UQB_145 not in the Motif Atlas
- Homologous match to IL_8C3A_065
- Geometric discrepancy: 0.0725
- The information below is about IL_8C3A_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
7UQB|1|1|G|1444
7UQB|1|1|U|1445
7UQB|1|1|A|1446
7UQB|1|1|G|1447
7UQB|1|1|U|1448
7UQB|1|1|A2M|1449
7UQB|1|1|OMG|1450
*
7UQB|1|1|C|2354
7UQB|1|1|G|2355
7UQB|1|1|A|2356
7UQB|1|1|A|2357
7UQB|1|1|A|2358
7UQB|1|1|C|2359
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain b
- Nucleolar GTP-binding protein 1
Coloring options: