IL_7UQZ_010

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GUU*AGUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UQZ_010 not in the Motif Atlas

Geometric match to IL_5U3G_002

Geometric discrepancy: 0.2955

The information below is about IL_5U3G_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_22373.1

Basepair signature

cWW-L-R-cSH-cSH-cWW

Number of instances in this motif group

4

Unit IDs

7UQZ|1|1|G|176
7UQZ|1|1|U|177
7UQZ|1|1|U|178
*
7UQZ|1|1|A|238
7UQZ|1|1|G|239
7UQZ|1|1|U|240
7UQZ|1|1|G|241
7UQZ|1|1|C|242

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain h

60S ribosomal protein L35-A

Chain j

60S ribosomal protein L37-A