3D structure

PDB id
7UQZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
CGGAAUU*GGAGAUG
Length
14 nucleotides
Bulged bases
7UQZ|1|1|U|1716, 7UQZ|1|1|A|1729
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UQZ_067 not in the Motif Atlas
Homologous match to IL_5TBW_073
Geometric discrepancy: 0.0876
The information below is about IL_5TBW_073
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_60192.2
Basepair signature
cWW-tSH-tSH-tSS-tHS-L-R-cWW
Number of instances in this motif group
3

Unit IDs

7UQZ|1|1|C|1711
7UQZ|1|1|G|1712
7UQZ|1|1|G|1713
7UQZ|1|1|A|1714
7UQZ|1|1|A|1715
7UQZ|1|1|U|1716
7UQZ|1|1|U|1717
*
7UQZ|1|1|G|1727
7UQZ|1|1|G|1728
7UQZ|1|1|A|1729
7UQZ|1|1|G|1730
7UQZ|1|1|A|1731
7UQZ|1|1|U|1732
7UQZ|1|1|G|1733

Current chains

Chain 1
25S rRNA

Nearby chains

Chain R
60S ribosomal protein L19-A
Chain Z
60S ribosomal protein L27-A
Chain c
60S ribosomal protein L30
Chain p
60S ribosomal protein L43-A

Coloring options:


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