IL_7UQZ_136

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

7UQZ|1|6|G|52, 7UQZ|1|6|A|53

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UQZ_136 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.2392

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7UQZ|1|6|U|26
7UQZ|1|6|G|27
*
7UQZ|1|6|U|51
7UQZ|1|6|G|52
7UQZ|1|6|A|53
7UQZ|1|6|A|54

Current chains

Chain 6

ITS2 rRNA

Nearby chains

Chain G

60S ribosomal protein L8-A

Chain K

Proteasome-interacting protein CIC1

Chain o

Ribosome biogenesis protein 15