IL_7UVV_065

3D structure

PDB id

7UVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7UVV|1|A|A|1797, 7UVV|1|A|C|1812, 7UVV|1|A|U|1816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UVV_065 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0864

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7UVV|1|A|U|1794
7UVV|1|A|G|1795
7UVV|1|A|C|1796
7UVV|1|A|A|1797
7UVV|1|A|A|1798
7UVV|1|A|A|1799
7UVV|1|A|C|1800
*
7UVV|1|A|G|1809
7UVV|1|A|G|1810
7UVV|1|A|A|1811
7UVV|1|A|C|1812
7UVV|1|A|G|1813
7UVV|1|A|U|1814
7UVV|1|A|A|1815
7UVV|1|A|U|1816
7UVV|1|A|A|1817

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA