IL_7UVV_095

3D structure

PDB id

7UVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCUAGUAC*GGACCAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UVV_095 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.3255

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7UVV|1|A|C|2647
7UVV|1|A|C|2648
7UVV|1|A|U|2649
7UVV|1|A|A|2650
7UVV|1|A|G|2651
7UVV|1|A|U|2652
7UVV|1|A|A|2653
7UVV|1|A|C|2654
*
7UVV|1|A|G|2659
7UVV|1|A|G|2660
7UVV|1|A|A|2661
7UVV|1|A|C|2662
7UVV|1|A|C|2663
7UVV|1|A|A|2664
7UVV|1|A|G|2665

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6