IL_7V08_044
3D structure
- PDB id
- 7V08 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.36 Å
Loop
- Sequence
- CUCAUCAG*CUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 7V08|1|1|U|1191, 7V08|1|1|C|1192, 7V08|1|1|C|1316, 7V08|1|1|A|1318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7V08_044 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.0877
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7V08|1|1|C|1187
7V08|1|1|U|1188
7V08|1|1|C|1189
7V08|1|1|A|1190
7V08|1|1|U|1191
7V08|1|1|C|1192
7V08|1|1|A|1193
7V08|1|1|G|1194
*
7V08|1|1|C|1314
7V08|1|1|U|1315
7V08|1|1|C|1316
7V08|1|1|A|1317
7V08|1|1|A|1318
7V08|1|1|G|1319
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L9-A
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- 60S ribosomal protein L16-A
- Chain S
- 60S ribosomal protein L20-A
- Chain r
- Ribosome biogenesis protein NSA2
- Chain s
- Nuclear GTP-binding protein NUG1
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