IL_7V08_115

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

ACAC*GCGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V08_115 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2853

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

7V08|1|1|A|3163
7V08|1|1|C|3164
7V08|1|1|A|3165
7V08|1|1|C|3166
*
7V08|1|1|G|3284
7V08|1|1|C|3285
7V08|1|1|G|3286
7V08|1|1|U|3287

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 9

Ribosome biogenesis protein ALB1