IL_7V08_140

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

7V08|1|6|G|52, 7V08|1|6|A|53

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V08_140 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.2283

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7V08|1|6|U|26
7V08|1|6|G|27
*
7V08|1|6|U|51
7V08|1|6|G|52
7V08|1|6|A|53
7V08|1|6|A|54

Current chains

Chain 6

ITS2

Nearby chains

Chain G

RPL8A isoform 1

Chain K

Proteasome-interacting protein CIC1

Chain o

Ribosome biogenesis protein 15