IL_7V08_160

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

CACA*UUGCG

Length

9 nucleotides

Bulged bases

7V08|1|1|U|3283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V08_160 not in the Motif Atlas

Geometric match to IL_413D_001

Geometric discrepancy: 0.3584

The information below is about IL_413D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_13404.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

7V08|1|1|C|3164
7V08|1|1|A|3165
7V08|1|1|C|3166
7V08|1|1|A|3167
*
7V08|1|1|U|3282
7V08|1|1|U|3283
7V08|1|1|G|3284
7V08|1|1|C|3285
7V08|1|1|G|3286

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 9

Ribosome biogenesis protein ALB1

Chain z

UPF0642 protein YBL028C