IL_7V2M_020

3D structure

PDB id

7V2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

7V2M|1|A|A|516, 7V2M|1|A|U|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V2M_020 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1558

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7V2M|1|A|G|499
7V2M|1|A|U|500
7V2M|1|A|G|501
7V2M|1|A|C|502
7V2M|1|A|C|503
7V2M|1|A|A|504
7V2M|1|A|G|505
*
7V2M|1|A|C|512
7V2M|1|A|G|513
7V2M|1|A|G|514
7V2M|1|A|U|515
7V2M|1|A|A|516
7V2M|1|A|A|517
7V2M|1|A|U|518
7V2M|1|A|A|519
7V2M|1|A|C|520

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain L

30S ribosomal protein S12