IL_7V2M_051

3D structure

PDB id

7V2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V2M_051 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.155

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7V2M|1|A|C|1285
7V2M|1|A|G|1286
7V2M|1|A|G|1287
7V2M|1|A|A|1288
7V2M|1|A|U|1289
7V2M|1|A|U|1290
*
7V2M|1|A|A|1311
7V2M|1|A|U|1312
7V2M|1|A|G|1313
7V2M|1|A|A|1314
7V2M|1|A|A|1315
7V2M|1|A|G|1316

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain V

30S ribosomal protein Thx