3D structure

PDB id
7WTM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CCAAU*AG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7WTM_025 not in the Motif Atlas
Geometric match to IL_5J7L_018
Geometric discrepancy: 0.0842
The information below is about IL_5J7L_018
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_03109.3
Basepair signature
cWW-cWS-tWH-cWW-L
Number of instances in this motif group
6

Unit IDs

7WTM|1|C2|C|443
7WTM|1|C2|C|444
7WTM|1|C2|A|445
7WTM|1|C2|A|446
7WTM|1|C2|U|447
*
7WTM|1|C2|A|460
7WTM|1|C2|G|461

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SE
40S ribosomal protein S4-A
Chain SJ
40S ribosomal protein S9-A
Chain SY
40S ribosomal protein S24-A

Coloring options:


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